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As to the main question - it depends on how the server works. I haven't used Weblogic before, so I don't know how good it's class-loading is. I'd guess that there is some way to tell it to reload the application without restarting the whole server program, but reloading the server program would work.
As to your specific problem, if I had to guess, they're being placed in the wrong spot. Or there is some other misconfiguration with the server - it's keeping a cache or something along those lines. Without knowing the system in more detail, I'm afraid I can't help. I'd suggest looking through Weblogic support forums (I'm assuming they exist).
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